PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462847683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 259aa    MW: 29216.4 Da    PI: 7.4352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462847683genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.46.9e-2936139198
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 
                f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede  + W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++    + +l++
  462847683  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAAKPWRFRYSYWTSSQSYVLTKGWSRYVKEKNLDAGDVVQFERIRGlgFGDRLFI 135
                99***************************9666668889************************************************8865433444555 PP

                EEE- CS
         B3  95 kvfr 98 
                +++r
  462847683 136 GFRR 139
                5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3931145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-2833137IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-2834126No hitNo description
SMARTSM010193.4E-2536141IPR003340B3 DNA binding domain
PfamPF023623.1E-2636139IPR003340B3 DNA binding domain
PROSITE profilePS5086313.32436140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MALNHLSQEH PQAWPWGMAM YTNLHYHQHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLSGDSGE KGLILSFEDE AAKPWRFRYS YWTSSQSYVL TKGWSRYVKE KNLDAGDVVQ  120
FERIRGLGFG DRLFIGFRRR GESATAAVSP LPAVRVAAAA QTAGEQQPWS PMCYSTSGSY  180
PNSPANSYAY RQSVDHDHSN THHAGESSAA SVPSRRLRLF GVNLDCGPEP EAETPTAMYG  240
YMHQSPYASF AEPNNWSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-443315011127DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450302.11e-143hypothetical protein SORBIDRAFT_05g003450
SwissprotQ53QI01e-128Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLC5Y5161e-143C5Y516_SORBI; Putative uncharacterized protein Sb05g003450
STRINGSb05g003450.11e-142(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.18e-56B3 family protein